Practical Fragments

This blog is meant to allow Fragment-based Drug Design Practitioners to get together and discuss NON-CONFIDENTIAL issues regarding fragments.

28 July 2009

Guest Blogger: Darren Begley Hidden Pool Response

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Folks, as you know (or may not) we have invited the reading community of Practical Fragments to guest blog. In response to this post we got...
1 comment:
26 July 2009

Is FBDD a FADD?

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Two reviews in the July issue of Drug Discovery Today provide an update on the state of FBDD. The first , from researchers at the VU Univer...
1 comment:
21 July 2009

Fragments in Japan

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We missed this meeting in our last events list , but Daisuke Tanaka of Dainippon Sumitomo Pharma reports on LinkedIn that: On June 22, FBDD...
20 July 2009

Fragments for sleeping sickness don’t lie still

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In fragment-based drug discovery, the binding mode of the initial fragment often remains constant during the course of optimization (see AT9...
29 June 2009

Fragments of the future - part 3 (977 million and counting)

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A few weeks ago we gave a passing nod to work by Jean-Louis Reymond, who with colleagues enumerated all possible compounds with up to 11 C...
3 comments:
27 June 2009

Fragments vs RNA

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One of the promises of fragment-based methods is that they can tackle “hard” targets such as protein-protein interactions and nucleic acids....
21 June 2009

Fragments in cells

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A couple months ago I considered writing an April Fools’ post on screening fragments in vivo. A recent paper in J. Med. Chem. reports som...
1 comment:
14 June 2009

Fragments of the future - part 2 (The intersection of chemical and biological space)

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In a previous post about heterocycles that appear chemically feasible but have not been reported, we wondered whether these molecules would...
11 June 2009

Hidden Talent Pool

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I have a question for the followes/readers here. Is there a hidden talent pool of recent Ph.Ds who have training in FBDD and can immediatel...
2 comments:
02 June 2009

Fragments of the future

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We recently provided a list of suppliers of commercial fragment libraries . A problem with buying compounds from these sources, of course, i...
1 comment:
29 May 2009

Size Doesn't Matter...Complexity Does...or does it?

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With 16 days left to vote (Use you franchise!!!) 17 of 20 respondents have said that FBDD is integrated in the hit finding stage at their co...
22 May 2009

Commercial fragments – part 2

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Teddy recently observed that it’s not the size of your library that matters, but how you use it. But how do you get a fragment library in t...
3 comments:
13 May 2009

It's Not How Big it Is, It's How You Use It.

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Boys will be boys, won't they. There is some gene buried on the Y chromosome that makes them think if something works as is, the bigger...
12 May 2009

Fragment linking: too strained, too flexible, or too positive?

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One of the most rewarding fragment-based outcomes is to link two fragments together and get a pop in activity, as predicted by William Jen...
03 May 2009

More on DOCKing fragments and sampling chemical space

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A few weeks ago, we highlighted a paper from Brian Shoichet’s group at UCSF demonstrating that computational screening could successfully ...
18 April 2009

Updated Again: Fragment Events in 2009

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It seems the fragment calendar was front-loaded this year, but there are still a few upcoming events. June 8-9 : GTCbio is holding its “ Fou...
10 April 2009

LELP fragments reach their potential

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In last month’s issue of Nature Reviews Drug Discovery , György Keserü of Gedeon Richter and Gergely Makara of Merck published a thought-pro...
07 April 2009

Book Review on FBDD Book

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There is a review just publish ASAP in JACS of the Zartler and Shapiro edited book on FBDD . Overall, it is a nice review (Thanks to Andrew ...
02 April 2009

Nuclear Magnetic Crystallography part II

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In what can only be seens as a cosmic convergence, a second paper has appeared on NMR-X-ray hybridization . This one is a collaboration fro...
01 April 2009

Nuclear Magnetic Crystallography

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There is often a competition, explicit or implied, between NMR spectrometrists and X-ray crystallographers. A new technique merges the best...
1 comment:
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